For more information:
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Choose the strategy for analysis with two choices:
1. Choose the model type to run the differential expression analysis with (between linear model (two
sample) vs limma (one sample))
2. Choose the type of analysis (Whole Proteome - Precursor or Protein level) or IP-DIA-LFQ. Output files
from DIA-NN should be used as input after.
NOTE: No default set but recommend setting of Protein level/IP-DIA + Magma (limma model). Check
"About" page or manuscript for more details.